Question

Defragment SAN disks -- Good or bad?

Asked by: MikeOM_DBA

OS: RH Linux X86_64
DB: 11.1.0.7
Storage: SAN w/64k page size.

What does Oracle recommend as far as running disk defragmentation utilities on the database mount points?
Our SA set this up and has been running it for a little over a week -- and we suspect it is causing some issues.

Thanks for any white-papers, links, docs, rumors, suspicions and hearsay you can provide.

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Asked On
2009-09-08 at 09:39:06ID24715424
Tags

Defragment

,

SAN disks

,

11g

Topics

Oracle 11.x Database

,

Oracle Database

,

Storage Technology

Participating Experts
4
Points
500
Comments
11

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Answers

 

by: dvzPosted on 2009-09-08 at 09:54:38ID: 25283792

Mike, a qualified opinion is that it's not recommended, not well studied, and while I do not have a SA's experience with SAN, it seems not worth the bother.  I cannot guess whe s/he has made such a decision without (1) considering and then (2) listening to the customers' complaints (you) that new problems arose when this procedure was introduced.  Do the problems stop when the defrag stops?  Worth pursuing with one's supervisor....

dvz

 

by: mrjoltcolaPosted on 2009-09-08 at 10:45:58ID: 25284308

I think defrag at the SAN / filesystem level is doing it in the wrong place. I've always felt that way.

I have only worked with EMC and Netapp, and the Netapp work was very brief. I had more in-depth experience with EMC and EMC engineers used to chide us at IBM to let the cache do the work and not worry about hot-spots until they happened. It turned out to be good advice, mostly. I never once remember having to actually defrag anything on an EMC SAN, but we did _rarely_ move a LUN due to a hot-spot. (ie. multiple slices on a physical disk were contending, so we'd move one slice to a different spindle) but this is different than defrag. I just bring it up because its the only maintenance on an EMC I was ever involved in. Defrag is SAN/filesystem dependant. What are you using? I assume you are not using ASM, based on the fact that your SA has setup a defrag process, so what are the specifics? Cooked filesystem, LVM?

You might point out to your SA that filesystem fragmentation and tablespace level fragmentation are totally different things. In Oracle the most critical fragmentation is segment level fragmentation. Defragmentation of a SAN volume does not imply defragmentation of Oracle segments. As we know, intra-tablespace object fragmentation that can be completely different than the filesystem, based on growth of multiple object segments causing interleaving. The OS is blind to this. This is why I pre-allocate most of my tablespaces, avoid using auto-extend features, and then take care of fragmentation maintenance at the Oracle extent level. The OS /SAN is handicapped in that it cannot see into the Oracle tablespace so I don't want it involved in the first place.

Historically, with the EMC systems I've been involved with, defragging is not done, period. As I said, we did monitor for hot-spots are, and periodically migrated a LUN.

With filesystems and storage, I prefer reactive approach vs. compulsively preemptive. Too many cooks in the kitchen can cause trouble. Your SA might have his SAN defrag running while your index defrags are running or your backups are running. That could result in a disasterous tax on the IO, all for maintenance tasks.

I place it in the realm of optimization. Don't do it until its observably necessary, then do it at the most productive layers. That is Oracle, first, filesystem second.

ASM should be a consideration, that gets the SA out of the kitchen altogether. :)

 

by: mrjoltcolaPosted on 2009-09-08 at 11:16:48ID: 25284568

A good article (one references the other). It supports use of a larger stripesize, if by 64kb pagesize you meant stripesize, this may also be of interest. I used this as a point of reference for a few systems.

http://eval.veritas.com/downloads/pro/dbed22_best_practices_paper.pdf

http://www.oracle.com/technology/deploy/availability/pdf/OOW2000_same_ppt.pdf

 

by: MikeOM_DBAPosted on 2009-09-08 at 12:39:37ID: 25285414

Thanks both for your response, I myself was very sceptical about this "defrag" business. I had never heard anyone doing it on SAN.

I myself (until recently) had been exposed to EMC and had the same experience of the EMC engineers talking about the cache, in fact one time that for some reason the cache was not set (or failed), everything grinded to a halt.

Here we got HP's EVA? or something like that -- our sa is on leave this week, so it will give me some time to work the manager.

I have been "pushing" ASM since I work here (1 yr), but this was a (production mission-critical application) migration from 9i to 11g and HPUX to RH5Linux. Management did not want another new "hurdle" in the mix.

I'll check out those articles, thanks again.

 

by: mrjoltcolaPosted on 2009-09-08 at 14:05:14ID: 25286155

I've been able to go my whole DBA career without defragging filesystems. Honestly I haven't run a defrag on a disk since Windows 95 days. I think you should lobby your SA to turn it off until you show a need.

As you and I know, Oracle disk requirements are different than a file-server. There are not many thousands of files, becoming fragmented due to constant updates. There are a few, very large files of contiguous storage and the updates do not change the filesystem allocation at all, except, in cases like NetApps WAFL. My research indicates that WAFL has some downsides, such as when the filesystems grow past a given capacity, then the traditional block-level filesystems have advantage.

I can relate to the ASM resistance.  I got pushed into it for a RAC setup, and we found how much easier it was than working with RAW devices, and it grew on me.

 

by: it-rexPosted on 2009-09-08 at 15:36:37ID: 25286760

thanks for a great Q and great answers!

 

by: andyalderPosted on 2009-09-09 at 07:55:48ID: 25291932

At least the EVA isn't thinly provisioned so a defrag won't suddenly cause thin volumes to become fat. You might have multiple LUNs on one disk group though in which case defrag will cause unnecessary I/Os which will slow down the other LUNs.

 

by: MikeOM_DBAPosted on 2009-09-09 at 12:34:08ID: 25294740

OK, found out that the SAN defrag was done due to us creating/dropping and re-creating the database several times before go-live, the bad part is that the SA scheduled the defrag to execute periodically, which is unnecessary because the database files (99.9% of the time)will never release storage.

The SA manager agreed to stop the defrag.

Thanks to all.

 

 

by: mrjoltcolaPosted on 2009-09-09 at 12:38:34ID: 25294774

A happy ending! Glad you worked it out. -mjc

 

by: andyalderPosted on 2009-09-09 at 14:01:23ID: 25295507

Yay! Oracle points - I only know it from the storage side.

Do you Oracle gurus defrag the database periodically instead of defragging the file system? I ask because tomorrow I see a MS SQL customer who insists on defragging his databases every other night to slightly speed up table scans.

 

by: mrjoltcolaPosted on 2009-09-09 at 14:34:27ID: 25295814

>>Do you Oracle gurus defrag the database periodically instead of defragging the file system?

We have two types of fragmentation to be concerned with. Segment fragmentation and block/row fragmentation. The former is simply the unit of allocation of an Oracle segment (index, table, etc.) and is the same concept as an LVM extent. The latter is block/row level, which happens when rows become deleted, updated, chained, etc.

Periodically, but rarely as a standard maintennance procedure, do I do segment level defrag. Thats more of a reactive action, when we spot a segment that has grown to some huge number of extents (in the many thousands), and simply indicates the DBA did not originally plan for the appropriate capacity. If the table is designed properly, it will have appropriate pre-allocation and extent sizes that will ensure large allocation units for optimal contiguous row storage for multi-block scans and readahead. So for a data warehouse, I might make my large tables use uniform extents of large sizes (32M, 256M, etc.). So a defrag in that case would be probably of little benefit. But for parallel queries, Oracle will scan multiple segments in parallel, so whether they exist contiguously or separated, probably is not as important. But thats a question for storage gurus, like you.

The only regular maintenance type row/block defrag that is very common is regarding indexes, due to deleted or migrated entries. The indexes will gradually pickup "dead" space due to deleted keys and the only practical way to coalesce them is to rebuild them.

As far as your SQL Server customer defragging every other night, I doubt its doing him any good. I hightly doubt that in 2 days, his tables become so fragmented that a reorg is worth it.

20120131-EE-VQP-002

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