Having two domains on our network here, I concur with mpfister. But to answer your question directly, you can change the master browser by turning that PCs master browser service off.
In a Windows network, the PCs "sort of" get together and elect a master browser. IN your case they decided upon your linux box which isn;t doing what it is suppsoed to do in your network environment.
In Linux, it is usually Samba that controls whether or not that computer allows master or master browser requests.
I have several Linux servers and I ensure that browser services are turned off. Check your version of Linux or the Linux Server software system itself as it could be as simple as a web interface for Samba that will allow you to turn it off (as is the case in mine, which makes it very easy). Otherwise, do a search for Samba Master Browser and you'll get some good results.
http://web.mit.edu/rhel-do
Hope this helped you a bit.
John
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by: mpfisterPosted on 2007-05-16 at 06:37:38ID: 19100615
If you got a working DNS you won't need the browser service. Disable service "Computer Browser" on your Windows systems (and Unix systems if possible). If there is a real need for NetBios Name resolution, use WINS instead.