MySite loads a different CSS file which you need to override or adjust. You need to make sure that your CSS code loads in the correct order. Sounds like the default SP css for MySites is loading after your CSS code. I usually create override CSS files to take care of that. Also put a querystring var after your CSS include path to ensure that clients have to most recent version of your css code.
MySites.css?ver=2
I usually increment the value for each round of changes. That should fix your issue
cheers
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by: tedbillyPosted on 2008-05-10 at 09:57:12ID: 21539641
All customization to sharepoint should be completed using their deployable solutions technology. Basically it's a specially CAB file with a manifest that will correctly deploy customization to Sharepoint.
What is VERY important is that manual customization is NOT included in backups. So, if you had to do a disaster recovery you would risk restoring successfully.
Everytime a 'My Site' is created it's a new site collection and because you didn't use solutions I have a feeling that Sharepoint is not finding your customization. The Sharepoint SDK has information on this topic. It would take far to long to duplicate it here and I would do it as well.