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Creating custom prerequisite package for Click once deployment

Iam a newbie in this field and I am having trouble creating my custom prerequisites.
I need to create a package that contains a msi file which I have created using the .NET frame work configuration tool. What I am trying to achieve is to have this msi file installed as prerequisite so that my .NETapplication will have sufficient privilleges to run on the client machine.

I am using  Bootstrapper manifest generator for creating my custom package .The build output was successful with 0 warning and I could see the output folder on  C:\Program Files\Microsoft SDKs\Windows\v6.0A\Bootstrapper\Packages.

However it is not appearing in the prerequisites window in my visual studio IDE.

Am I missing some cases. I am using Microsoft Visual C# 2008 express edition.

Any help would be really appreciated.
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vbturbo
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