Question

RUBY - Read and write to file - selected rows

Asked by: philsivyer

Hello
I want to be able to select rows (or size - say 40KB chunks of data )from a file and write selection to a new file.
The original file is too big to read using notepad so I want to break the original file into seperate manageable files.  Would it be better to select number of rows per file or by size?
Any help much appreciated

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Asked On
2009-03-05 at 07:33:02ID24201858
Topic

Ruby Scripting Language

Participating Experts
2
Points
500
Comments
18

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Answers

 

by: philsivyerPosted on 2009-03-05 at 07:35:58ID: 23806547

Hello
Forgot to mention that the files are .txt

 

by: philsivyerPosted on 2009-03-05 at 07:56:21ID: 23806819

I have managed to play and this basic script seems to do the trick - but it would be great if there was a solution to automate the whole process and write out files in manageable chunks from the one script.
My attempt thus far..

a = File.new("C:/RUBY_WORKING_MODELS/Files_test.txt")
a.sysseek(0, IO::SEEK_CUR)
p a.sysread(20)

 

by: GertonePosted on 2009-03-05 at 08:04:58ID: 23806910

so, binary access is not required.
How big will these files be?
Will they easily fit in memory eg 100MB
or will they rather be in the Gbyte range

 

by: GertonePosted on 2009-03-05 at 11:04:03ID: 23809063

I was wondering,
maybe something like this could help
set the line counter according to the blocksize you want
I am not sure that IO.foreach goes through the file streamingly,
but even still the memory object would be easy to handle in the 100MB range, far beyond what notepad can swallow

I chosse a line based approach, maybe you want to do some regular expression logic on the part files afterwards

I have done this with a 100MB file on an old laptop with no problems

Block_size = 500
curr_block = 1
arr = []
 
def dump_in_file (lar, lno)
  res = File.open("F:\\12_Ruby\\part_#{lno}.txt", "w")
  lar.each do |a|
    res.puts a
  end
 end
 
IO.foreach('F:\12_Ruby\PHILDATA.txt') do |line|
			arr << line
      if arr.length == Block_size then 
       dump_in_file(arr, curr_block)
        arr = []
        curr_block += 1
     end 
   end
 dump_in_file(arr, curr_block)

                                              
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by: leflonPosted on 2009-03-05 at 11:34:16ID: 23809533

Gertone, what will happen if a single line is bigger than your Block_size?
The dump inside the if statement will never again be reached, or am I wrong? In the worst case this would make the output file as big as the input file ;-).

leflon

 

by: GertonePosted on 2009-03-05 at 12:04:10ID: 23809877

block_size is the number of lines in a block actually
If all data is on one line, than the result file will be the input file, that is correct
then we need a mildly different approach.
For that I need more info on the content of the file.
I am still curious about the filesize too

 

by: GertonePosted on 2009-03-05 at 12:30:29ID: 23810221

well, I have been dealing with phils data files before,
and a lot of it are dumps from excel or databases


note that the original question stated
> I want to be able to select rows (or size - say 40KB chunks of data )from a file

so I think it is safe to assume that there will be enough lines in the data

The reason why I choose the line approach, I mentioned with my answer: when choosing a memory-block approach, one might break a line, and that won't help in data analysis later

 

by: leflonPosted on 2009-03-05 at 12:39:38ID: 23810335

Yep, I agree. Reading memory blocks may cause problems for further analysis

And I have to admit that I was misinterpreting the arr.length statement. (mea culpa - have to refresh my old ruby memories)

Apart from being a nice little project, the first question that came to my mind was: Why using Notepad for reading a huge text file?

cheers
leflon

 

by: philsivyerPosted on 2009-03-05 at 13:05:47ID: 23810665

Hello
The size of the file is 5GB and I suggested using ULTRAEDIT to open the files but company politics and all that - it has to be notepad.
Gertone - will your script write seperate files and with a a naming convention?

 

by: GertonePosted on 2009-03-05 at 13:33:50ID: 23811039

ultraedit will not handle 5 GB files as well.
Yes, there is a naming convention... block number will be in teh file name.
not padded with zeroes, so it won't sort well.
But if you want that, I can change that
I am curious now, You won't be able to load 5GB in memory, so I hope that the IO.foreach does the right thing there

 

by: GertonePosted on 2009-03-05 at 14:32:09ID: 23811744

Hi Phil, I could not resist doing the tests.
On my laptop I created a 2GB text file and split that up into 2.5MB chunks using the above script.
Memory usages never goes beyond 1.2GB on my two year old window XP laptop
So, we can safely assume that the process does not generate an in memory copy of the file.
You should be able to tackle your task with this script.
Two notes
- we should add a zero padding in the numbering otherwise we screw up the sort ordering of the files
- if you really need 40k files, you have too many to elegantly put them in one directory, so we need some extra soft to generate a sub directory structure
Let me know if you need help with either of the two tasks

 

by: philsivyerPosted on 2009-03-06 at 01:34:13ID: 23815018

Gertone
I mislead you with file size - the file is 1.2GB.
I said 40k files - what can notepad handle with relative ease?
Yes- I would need help with "zero padding - what does that do?

Regards

 

by: GertonePosted on 2009-03-06 at 01:46:43ID: 23815091

Hi Phil,

Notepad can easily handle 3 to 4 MB, easily
so I would not split all of that in tiny little files, because the thousands of files extracted from a gigabyte file,
will do your windows more harm than a 4MB file will do your Notepad

You will have to iterate.
In an old file I have from you, 500 lines will mean 2.5MB
You will have to run and see what the average line size is
That is the matimatical rule of 3,
run the program, see how much MB 500 lines are, set the Block_size constant to a number you need to get 4MB and run again

I have changed the dump_in_file method to do zero padding in the file name, now they all sort correctly in the dir list.
Pick your resulting file size large enough (4 MB will give uyou about 300 result files) in order to not have to start working with subdirs

have fun

def dump_in_file (lar, lno)
  lnos = sprintf("%06d", lno)
  res = File.open("F:\\12_Ruby\\large\\part_#{lnos}.txt", "w")
  lar.each do |a|
    res.puts a
  end
 end
                                              
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by: philsivyerPosted on 2009-03-06 at 02:28:43ID: 23815311

Gertone - Brilliant!
Can you give me a brief summary as how this works - please

 

by: GertonePosted on 2009-03-06 at 02:33:27ID: 23815333

I read in the file line by line (that is what IO.foreach does)
I put the line on an array
If the array reaches a certain size, I write the array in a file and clear teh array.
I keep a counter for every file I write, so I can add dynamic file names

I have stuffed the writing to the file in a seperate method, becaus I have to call that again at the end
(most likely the last lines don't make a full array, so I need to clear that out before I end the program)

pretty straightforward I think

 

by: philsivyerPosted on 2009-03-06 at 08:21:19ID: 23818101

Gertone
Thanks for  this - everything worked just great

Regards

 

by: philsivyerPosted on 2009-03-06 at 08:22:17ID: 31554370

Many Thanks

 

by: GertonePosted on 2009-03-06 at 08:34:36ID: 23818267

welcome

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