I'm guessing you could use the WindowsMediaPlayer control and PowerPoint to do this in .Net. Add both as an activex component in your Form. Using the MediaPlayer's CurrentPosition you can determine where in the video you are and based on that change slides.
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by: TSmoothPosted on 2007-07-20 at 05:11:01ID: 19530229
If you are open to some newer technology, you can look into using Silverlight. With media encoded for silverlight, you can embed markers on a timeline and these markers will raise the "MarkerReached" event of the silverlight media element at which point you could programatically advance a slideshow. Look at the Silverlight SDK at the MarkerReached Event of the MediaElement in silverlight for more information.