Honestly,
look into hardeing SQL first
http://www.owasp.org/index
or just search "SQL Hardening Techniques"
Next, harden your Web Server, from common mistakes like writable directories, execution permissions, borwasable directories
Research "Apache Hardening" or "IIS Hardening"
The question is not as vagued as you mentioned, but requires extra work, all for then are free.
You will not find any "all inclusive" solution to your answer though, because it does not exist
Jfer
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by: rsivanandanPosted on 2009-09-26 at 05:43:13ID: 25429687
Is this a plain website you're talking about or blogs?
/2009/03/2 5/clean-yo ur-sites-f rom- malwar es/
Check this out too;
http://www.rsivanandan.com
Cheers,
rsivanandan