Cannot Read files on server

I am baffled with my server, if I try to run a perl script from on the server it runs perfeclty fine. Trouble is when I try to run through the web all files will fail (-e filename) test all of them.
how can I solve this, previous days the server was running fine without problem, Do I need to configure somewhere in system files?
crush_Of_HeartsAsked:
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jhurstCommented:
answered the duplicate of this
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