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"Too few clusters" & "Index does not match position" errors.

Unable to lock C:, I resorted to the boot-disk version of Partition Magic, and began re-sizing C:., Half way through, the utility complains  "Too few clusters" & "Index does not match position" errors. What does that mean? What can I do?

I ran SeaTools on the physical drive (it's a Seagate, and it reports no errors).
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