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File Server Folder and Security Set up

Thought I would ask some expert advice on setting up a new file server. I have an existing W server 03 file server that has a mess of folders and such. I want to clean this up before moving files over to new W 2003 server.
What are prefered folder structures? Ex. IT, Accounting, HR, Quality, Safety, etc.
Preferred AD groups in OU? Ex. HR1, HR2, Accounting1, Accounting2
Adding employee user folders on file server as a defualt replacement to their local my documents folder.
Would it go //Server/joe_user or //Server/Users/joe?
What is easy way to point all clients from my documents to their folder on file server?
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sstone55423
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I was told that user folders should be set \\server\username instead of \\server\users\username because the clients would not have to be touched?
Yes, that will work, but then you have to create a share for each user, which is less secure.  Setting the home directory in a login script should not be very difficult.