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Upgrading to Mootools 1.2 without breaking slimbox install

I am using Mootools and slimbox to open an image slideshow on my site however I want to upgrade Mootools to version 1.2 however just updating the files causes it to break. I think this is because the person who coded the site made some custom changes to the JS files. How can I upgrade to the latest version of Mootools without breaking my current implementation? Here is the page:

I think the problem is that the slimbox.js has changed and it won't run because of the custom code in the new slimbox.js. How can i port these changes to the new version and make it work with Mootools 1.2?
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This helped me work out the solution. The other thing was that I was comparing the old version with a new compressed version. When I got the SRC of the new JS it was much easier to copy across the modifications.