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W32/Sality.gen Worm help!

I have a users system that appears to be infected with W32/Sality.gen worm, Vundo.grb and others.  I think we have hit a point where it should be formatted and rebuilt.My question is if I transfer his data (PST files, My docs, etc) to a new PC what are the chances that I will bring the infection with them since this seems to infect many different files from many different apps?
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