StephenMcGowan
asked on
Trying to Install BioPerl
Hi Im trying to Install Bioperl from CPAN, but seem to be running into trouble with the install...
I was just wondered if anybody could take a look at the transcript?
Thanks.
Stephen
BioPerl-Install.doc
I was just wondered if anybody could take a look at the transcript?
Thanks.
Stephen
BioPerl-Install.doc
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You've accepted an answer, so I'm not sure if you have this solved, or not. If not, read on...
Normally, to install a module, you use the install command from the CPAN module, as you tried. This will download and install all prerequisites. Maybe something is wrong with your CPAN configuration. Your global configuration is stored in /etc/perl/CPAN, and your user specific config in ~/.cpan. You can delete these, and you will be asked config questions next time you run CPAN. Or you can run "o conf init" from the CPAN prompt.
After that, try installing BioPerl from cpan. As root, run:
cpan install BioPerl
Normally, to install a module, you use the install command from the CPAN module, as you tried. This will download and install all prerequisites. Maybe something is wrong with your CPAN configuration. Your global configuration is stored in /etc/perl/CPAN, and your user specific config in ~/.cpan. You can delete these, and you will be asked config questions next time you run CPAN. Or you can run "o conf init" from the CPAN prompt.
After that, try installing BioPerl from cpan. As root, run:
cpan install BioPerl
ASKER
I've tried re-installing (install C/CJ/CJFIELDS/BioPerl-db-1
Checking prerequisites...
- ERROR: Data::Stag is not installed
so i have then quit out of the install, and entered "install Data::Stag" in>CPAN
but receive the following error messages:
External Module XML::LibXSLT, XSLT,
is not installed on this computer.
Data::Stag::XSLTHandler in Data::Stag needs it for XSLT Transformations
External Module XML::Parser::PerlSAX, SAX Handler,
is not installed on this computer.
Data::Stag::XMLParser in Data::Stag needs it for parsing XML
External Module GD, Graphical Drawing Toolkit,
is not installed on this computer.
stag-drawtree.pl in Data::Stag needs it for drawing trees
External Module Graph::Directed, Generic Graph data stucture and algorithms,
is not installed on this computer.
Data::Stag::GraphHandler in Data::Stag needs it for transforming stag trees to graphs
External Module Tk, Tk,
is not installed on this computer.
stag-view.pl in Data::Stag needs it for tree viewer
ok so for the C/CJ/CJFIELDS/BioPerl-db-1
Thanks,
Stephen
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