Windows Server 2000 - Check Disk Error - Windows found problems with the file system

Issue - After running check disk with the /F paramter windows shows this error message on and off.

Server: HP Proliant DL 380
Array Controllers and host adapters detected no errors.
Latest Support Pack has been installed.

IE: Ran the F parameter, the error would go away, then after a reboot, the message comes back.

C:\>chkdsk
The type of the file system is NTFS.
Volume label is Local Disk.

WARNING!  F parameter not specified.
Running CHKDSK in read-only mode.

CHKDSK is verifying files (stage 1 of 3)...
File verification completed.
CHKDSK is verifying indexes (stage 2 of 3)...
Index verification completed.
CHKDSK is verifying security descriptors (stage 3 of 3)...
Security descriptor verification completed.
CHKDSK is verifying Usn Journal...
Repairing Usn Journal file record segment.
Usn Journal verification completed.
Windows found problems with the file system.
Run CHKDSK with the /F (fix) option to correct these.

  35551813 KB total disk space.
  10332639 KB in 25523 files.
      8496 KB in 2496 indexes.
         0 KB in bad sectors.
     70559 KB in use by the system.
     23056 KB occupied by the log file.
  25140118 KB available on disk.

       512 bytes in each allocation unit.
  71103626 total allocation units on disk.
  50280236 allocation units available on disk.