Solved

query mssql Database with mirth

Posted on 2010-11-09
5
5,602 Views
Last Modified: 2012-05-10
I'm not very good at the programming aspect of my job.  Can someone look at this code and tell me where I'm screwing up?

I think I'm screwing up at tmp[blahblahblah] = result(1);

I know the field i'm grabbing from is a text field..
//DatabaseConnection
//see http://svn.sourceforge.net/viewvc/mirth/trunk/server/src/com/webreach/mirth/server/util/DatabaseConnection.java?view=markup 
var dbConn = DatabaseConnectionFactory.createDatabaseConnection('net.sourceforge.jtds.jdbc.Driver','jdbc:jtds:sqlserver://10.0.0.55:1433/raypax','username','password');


//the query
var AccNum = msg['tag00080050']['@tag'].toString();
var expression = "SELECT REPORT_TEXT FROM PACS_T_REPORT_TEXT WHERE EXAM_KEY = '" + AccNum + "';";  


//CachedRowSetImpl
//see http://developers.sun.com/prodtech/javatools/jscreator/reference/docs/apis/rowset/com/sun/rowset/CachedRowSetImpl.html
var result = dbConn.executeCachedQuery(expression); 

//go to the first result
result.next();
//get the value from the first colum as an integer

tmp['OBX']['OBX.5']['OBX.5.1'] = result(1);


result.close(); 
dbConn.close();

Open in new window

0
Comment
Question by:mwolfe83
  • 4
5 Comments
 
LVL 17

Expert Comment

by:sweetfa2
ID: 34096795
tmp[blah] =  result.getInt(1);
0
 

Author Comment

by:mwolfe83
ID: 34097006
Here is the error that it returned:
DETAILS:
Wrapped java.lang.ArrayIndexOutOfBoundsException: Array index out of range: 0

DETAILS:	Wrapped java.sql.SQLException: Invalid column index
	at com.mirth.connect.server.mule.transformers.JavaScriptTransformer.evaluateScript(JavaScriptTransformer.java:451)
	at com.mirth.connect.server.mule.transformers.JavaScriptTransformer.transform(JavaScriptTransformer.java:349)
	at org.mule.transformers.AbstractEventAwareTransformer.doTransform(AbstractEventAwareTransformer.java:48)
	at org.mule.transformers.AbstractTransformer.transform(AbstractTransformer.java:197)
	at org.mule.impl.MuleEvent.getTransformedMessage(MuleEvent.java:251)
	at com.mirth.connect.server.controllers.DefaultMessageObjectController.getMessageObjectFromEvent(DefaultMessageObjectController.java:737)
	at com.mirth.connect.connectors.file.FileMessageDispatcher.doDispatch(FileMessageDispatcher.java:52)
	at com.mirth.connect.connectors.file.FileMessageDispatcher.doSend(FileMessageDispatcher.java:129)
	at org.mule.providers.AbstractMessageDispatcher.send(AbstractMessageDispatcher.java:164)
	at org.mule.impl.MuleSession.sendEvent(MuleSession.java:191)
	at org.mule.impl.MuleSession.sendEvent(MuleSession.java:130)
	at org.mule.routing.outbound.AbstractOutboundRouter.send(AbstractOutboundRouter.java:85)
	at org.mule.routing.outbound.FilteringMulticastingRouter.route(FilteringMulticastingRouter.java:61)
	at org.mule.routing.outbound.OutboundMessageRouter$1.doInTransaction(OutboundMessageRouter.java:78)
	at org.mule.transaction.TransactionTemplate.execute(TransactionTemplate.java:48)
	at org.mule.routing.outbound.OutboundMessageRouter.route(OutboundMessageRouter.java:82)
	at org.mule.impl.model.DefaultMuleProxy.onCall(DefaultMuleProxy.java:247)
	at org.mule.impl.model.seda.SedaComponent.doSend(SedaComponent.java:209)
	at org.mule.impl.model.AbstractComponent.sendEvent(AbstractComponent.java:277)
	at org.mule.impl.MuleSession.sendEvent(MuleSession.java:201)
	at org.mule.routing.inbound.InboundMessageRouter.send(InboundMessageRouter.java:176)
	at org.mule.routing.inbound.InboundMessageRouter.route(InboundMessageRouter.java:143)
	at org.mule.providers.AbstractMessageReceiver$DefaultInternalMessageListener.onMessage(AbstractMessageReceiver.java:487)
	at org.mule.providers.AbstractMessageReceiver.routeMessage(AbstractMessageReceiver.java:266)
	at org.mule.providers.AbstractMessageReceiver.routeMessage(AbstractMessageReceiver.java:225)
	at com.mirth.connect.connectors.dimse.DICOMMessageReceiver$MirthStorageSCP.onCStoreRQ(DICOMMessageReceiver.java:193)
	at com.mirth.connect.connectors.dimse.DICOMMessageReceiver$MirthStorageSCP.cstore(DICOMMessageReceiver.java:211)
	at org.dcm4che2.net.DicomServiceRegistry.process(DicomServiceRegistry.java:238)
	at org.dcm4che2.net.NetworkApplicationEntity.perform(NetworkApplicationEntity.java:1158)
	at org.dcm4che2.net.Association.onDimseRQ(Association.java:971)
	at org.dcm4che2.net.PDUDecoder.decodeDIMSE(PDUDecoder.java:530)
	at org.dcm4che2.net.Association.onPDataTF(Association.java:948)
	at org.dcm4che2.net.State$Sta6.receivedPDataTF(State.java:239)
	at org.dcm4che2.net.Association.receivedPDataTF(Association.java:944)
	at org.dcm4che2.net.PDUDecoder.nextPDU(PDUDecoder.java:231)
	at org.dcm4che2.net.Association.run(Association.java:850)
	at java.lang.Thread.run(Unknown Source)
Caused by: java.sql.SQLException: Invalid column index
	at com.sun.rowset.CachedRowSetImpl.checkIndex(Unknown Source)
	at com.sun.rowset.CachedRowSetImpl.getInt(Unknown Source)
	at sun.reflect.GeneratedMethodAccessor297.invoke(Unknown Source)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)
	at java.lang.reflect.Method.invoke(Unknown Source)
	at org.mozilla.javascript.MemberBox.invoke(MemberBox.java:161)
	at org.mozilla.javascript.NativeJavaMethod.call(NativeJavaMethod.java:247)
	at org.mozilla.javascript.optimizer.OptRuntime.call1(OptRuntime.java:66)
	at org.mozilla.javascript.gen._32060774_24ea_4354_80c5_4a9ac4ceca47_340._c_doTransform_13(32060774-24ea-4354-80c5-4a9ac4ceca47:31)
	at org.mozilla.javascript.gen._32060774_24ea_4354_80c5_4a9ac4ceca47_340.call(32060774-24ea-4354-80c5-4a9ac4ceca47)
	at org.mozilla.javascript.optimizer.OptRuntime.callName0(OptRuntime.java:108)
	at org.mozilla.javascript.gen._32060774_24ea_4354_80c5_4a9ac4ceca47_340._c_script_0(32060774-24ea-4354-80c5-4a9ac4ceca47:42)
	at org.mozilla.javascript.gen._32060774_24ea_4354_80c5_4a9ac4ceca47_340.call(32060774-24ea-4354-80c5-4a9ac4ceca47)
	at org.mozilla.javascript.ContextFactory.doTopCall(ContextFactory.java:426)
	at org.mozilla.javascript.ScriptRuntime.doTopCall(ScriptRuntime.java:3157)
	at org.mozilla.javascript.gen._32060774_24ea_4354_80c5_4a9ac4ceca47_340.call(32060774-24ea-4354-80c5-4a9ac4ceca47)
	at org.mozilla.javascript.gen._32060774_24ea_4354_80c5_4a9ac4ceca47_340.exec(32060774-24ea-4354-80c5-4a9ac4ceca47)
	at com.mirth.connect.server.mule.transformers.JavaScriptTransformer.evaluateScript(JavaScriptTransformer.java:395)
	... 36 more

Open in new window

0
 

Author Comment

by:mwolfe83
ID: 34101941
After looking deeper into the archives of this forum, I found a post that seemed to get me a little closer. Now I am running into a LocalMap.put problem. It says the object is not defined. Any Ideas?
var AccNum = msg['tag00080050']['@tag'].toString();


//using stored procedure in javascript

var dbConn = DatabaseConnectionFactory.createDatabaseConnection ('net.sourceforge.jtds.jdbc.Driver','jdbc:jtds:sql server://10.0.0.55:1433/raypax', 'username', 'password');
var expression = 'select EXAM_KEY,REPORT_TEXT from PACS_T_REPORT_TEXT where EXAM_KEY= 10131' ;//here REPORT_TEXT is blob column
var result = dbConn.executeCachedQuery(expression);

result.next();
var xray = result.getClob(2);
var strOut = new java.lang.StringBuffer();
var aux = new java.lang.String();

// RTF data conversion

var kit = new Packages.javax.swing.text.rtf.RTFEditorKit()
var doc = new Packages.javax.swing.text.DefaultStyledDocument();
kit.read(xray.getAsciiStream(), doc, 0);

var text=doc.getText(0,doc.getLength());
// The data in Text Format

localMap.put('xray',text);

tmp['OBX']['OBX.5']['OBX.5.1'] = xray
0

dbConn.close(); 

Open in new window

0
 

Accepted Solution

by:
mwolfe83 earned 0 total points
ID: 34106797
Fixed it.  Man, that was rough.  I guess it would help if I knew ANY programming...


var accession;
var rptBody; //holds report text from PACS_T_REPORT_TEXT.REPORT_TEXT
accession = msg['tag00080050']['@tag'].toString();

//connect to DB
var dbConn = DatabaseConnectionFactory.createDatabaseConnection
('oracle.jdbc.driver.OracleDriver','jdbcracle:th in:@10.0.1.13:1521:RAYPAX1', 'pacs', 'pacs');

//query for report body
var SQL = "select REPORT_TEXT from PACS_T_REPORT_TEXT where EXAM_KEY= '" + accession + "'";
var result = dbConn.executeCachedQuery(SQL);
result.first();
try
{
var rptBody = result.getClob("REPORT_TEXT");
logger.error(rptBody);
var clobLength = rptBody.length();
var rptBodyFull = rptBody.getSubString(1,clobLength)
logger.error(rptBodyFull);


} catch (e) {
rptBody = "Exception retreiving report. No Report Found";
}
channelMap.put('rptBody',rptBody);

tmp['OBX']['OBX.5']['OBX.5.1'] = (rptBodyFull);


dbConn.close();

Open in new window

0
 

Author Closing Comment

by:mwolfe83
ID: 34134706
I figured it out on my own after living on the mirthcorp forum.
0

Featured Post

Optimizing Cloud Backup for Low Bandwidth

With cloud storage prices going down a growing number of SMBs start to use it for backup storage. Unfortunately, business data volume rarely fits the average Internet speed. This article provides an overview of main Internet speed challenges and reveals backup best practices.

Question has a verified solution.

If you are experiencing a similar issue, please ask a related question

Suggested Solutions

Title # Comments Views Activity
sql Audit table 3 82
SQL Trigger selecting another database 4 42
Selection from table2 where criteria for table1 10 58
SQL Query with Sum and Detail rows 2 62
I am showing a way to read/import the excel data in table using SQL server 2005... Suppose there is an Excel file "Book1" at location "C:\temp" with column "First Name" and "Last Name". Now to import this Excel data into the table, we will use…
Introduction: When running hybrid database environments, you often need to query some data from a remote db of any type, while being connected to your MS SQL Server database. Problems start when you try to combine that with some "user input" pass…
Exchange organizations may use the Journaling Agent of the Transport Service to archive messages going through Exchange. However, if the Transport Service is integrated with some email content management application (such as an antispam), the admini…

679 members asked questions and received personalized solutions in the past 7 days.

Join the community of 500,000 technology professionals and ask your questions.

Join & Ask a Question