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same table in different databases with different data vs single table in singlle database

Actually i am designing a database in MySql, In that the structure is there is one root organization  and there are several child organization. So should I go for a single databse in which the group interrelated tables store the data identified by a unique id to differentiate each child organization.
Or should I maintain different databases for each child organization with the same table structure and same tables  in all of them, but data related to each of them.
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Scott Madeira
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please answer it
Yes that is correct in multiple database environment it is difficult to get the data organization wise and year wise.but i am concern about performance.
thanks.
I am expecting a detail anatomy about the effect on the performance and all the detail ie when the tables from  multiple databases are loaded into memory.