I have a MOSS 2007 deployment for a school to Shared Services with students and staff seperated across them and their my sites as well.
Both Web Applications are setup with the Default Template Enterprise --> Site Directory. Now I have worked really hard great help from others on migrating databases upgrading creating proxies to support the Shared Services we had have got it working and check my sites and they work.
But now with the staff and or student web applications it is completely broken at the root because I know site directory is not working and is not available I can browse directly to applications under there for example a blog or a wiki but the root just gives you the standard error. My question is moving forward what do I do to replace the Site Directory so that I can get everything up and running I have been to the code plex site to look at the solution of a site directory I am more looking at just rebuilding a directory or page to link to blogs and wiki's, but how do you clean up this mess with the site directory and get it gone so that all I am left with is the resources under there. Is it at MOSS 2007 you do this or at Sharepoint 2010.