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Oracle is an object-relational database management system. It supports a large number of languages and application development frameworks. Its primary languages are SQL, PL/SQL and Java, but it also includes support for C and C++. Oracle also has its own enterprise modules and application server software.
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I guess file comparision might take lot of time if you are trying to compare offline.
Other option you can think of is to take a backup of these 2 DB's and restore it on temp server, do the comparision using TOAD, OEM, get the results and drop those DB's when your analysis is done
May be other experts can provide their comments as well