I'm trying to get a shell script to run. I think I've correctly defined both $database and $antibodydb, but I'm currently receiving the error output:
genomevsantibody.sh: line 4: syntax error near unexpected token `for'
genomevsantibody.sh: line 4: `for antibodydb in $(find ~/DatabaseTesting -name " *ABDatabase")'
any advice with this would be much appreciated. Thanks.
for database in $(find ~/Genomes -name "*DATABASE")
for antibodydb in $(find ~/DatabaseTesting -name "*ABDatabase")
echo "Processing $database"
blastall -p blastp -m 8 -d $antibodydb -i $database >> GenomeBlastResults.txt