Trouble running Winbatch automation script as a Windows service

I wrote a automation script using Winbatch that executes another desktop application and interacts with some of the GUI controls.  I compiled the Winbatch script as an executable for distribution, both as an exe for running as a regular app and an exs for running as a service.  It is running in several different environments on a variety of versions of Windows from XP, Server 2003, 7 and Server 2008.  Some of the clients are running the exs as a Windows service and it is working just fine, but other clients that also want to run it as a service are having a problem where the automation script starts but it doesn't appear to do anything - the other application that it is supposed to execute and interact with never starts.  If running the exe not as a service on the same client it works just fine.  Any ideas about what might be causing this and a possible solution?
virantAsked:
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Tony JLead Technical ArchitectCommented:
Do you know which OS's it fails on?

Windows 7 / 2008 don't allow services to run in session 0 any more so it may be because they're interactive that is the problem.
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virantAuthor Commented:
Does that mean there is no way to run an automation script to control a user application as a service in Windows anymore?
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Tony JLead Technical ArchitectCommented:
Sorry - didn't get that in my mail for some reason. I think third party utilities such as firedaemon can but not the way we always used to, no.
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