So here is the issue:
After enabling folder redirection for a client, the desktop icons "organize" themselves the next time the user logs in. Its doesn't cause any issues, however several users have complained.
The only noticable information i can provide is that domain accounts are locked out through Active Directory over the course of the night, as any user with a connection to the server causes an issue with the application it hosts. That said, the icons appear to organize themselves even after a simple reboot of the computer (have no verified on logoff)
Any thoughts let me know. Not critical just more annoying to the end users.