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How to fix Namespace issues within an R program?

Posted on 2014-12-01
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Last Modified: 2015-03-12
Hi,
I need help solving namespace issues with my program. The program works great when it is run once, but spits out errors if it has to run more than once, unless I restart Rstudio each time I want to run the program.

I have attached the program, the function file, and the 2 datasets.
Thank you.

Here is what is says:
Attaching package: ‘dplyr’

The following objects are masked from ‘package:stats’:

    filter, lag

The following objects are masked from ‘package:base’:

    intersect, setdiff, setequal, union

Loading required package: lattice
Loading required package: ggplot2

Attaching package: ‘MASS’

The following object is masked from ‘package:dplyr’:

    select


My program:
source("FT_functions_EE.R")
##### Read data: 
## data1: Date,Time,Price,Volume,TT (total traded= Price*Volume)
data1<-read.table("XYZ_EE_Long.txt",header=T,sep=" ", stringsAsFactors=F)
## features.dfm has 494 rows with 260 variables
features.dfm<-read.table("features_EE.txt",header=T,sep=" ",stringsAsFactors=F)

N<-5 ##### it works if N=1
for (i in 1:N){
##### Bin the data by bucket size of 5000 shares
volBinIdx5k<-MakeVolumeBinIdx(data1$Volume,5000)
data1.5k.dfm<-MakeBinCandles(data1,volBinIdx5k)

##### Normalize the features
library(caret)
trans<-preProcess(features.dfm,method=c("BoxCox","center","scale"))
transformed<-predict(trans,features.dfm)
}

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My functions:
MakeVolumeBinIdx<-function(data1.volume,volBinSize){
  ### PURPOSE: Find the indexes for a given size of volume bin, that is 
  ###            Find the indexes of the data.frame where the sum of the volume is equal
  ###             to the input volBinSize.
  ### INPUT: a vector of trades volume and the desired volume bin size
  ### OUTPUT: a vector indicating where each row belongs to which volume bin
  
  #create index
  volBin<-1
  sumVol<-0
  Volume<-data1.volume
  volBinIdx <- numeric(length(Volume))
  
  #create cutting for each volume bin
  for(i in seq_len(length(Volume))){
    sumVol<-sumVol + Volume[i]  
    if (sumVol<= volBinSize) {
      volBinIdx[i] <- volBin
    } else {
      volBinIdx[i] <-  volBin <- volBin + 1
      sumVol <- Volume[i]
    }
  }
  
  #clean environment
  rm(Volume,i,sumVol,volBinSize,volBin)
  
  return(volBinIdx)
}


MakeBinCandles<-function(data,volBinIdxk){
  ### PURPOSE: Create candles based on bins
  ### INPUT: a new data.frame containing only Date,Time, Price,Volume,TT, AND
  ###          a vector containing the output of MakeVolumeBinIdx
  ### OUTPUT: a data.frame  with Date,Time, OHLC, Volume,
  ###           HighIdx,lowIdx, TT,VWAP (=volume weighted average price)
  
  library(dplyr)
  
  data.return<-data %>%
    mutate(volBinIdxk=volBinIdxk) %>%
    group_by(volBinIdxk) %>%
    summarize(Date=head(Date,1),
              Time=head(Time,1),
              Open=head(Price,1),
              High=max(Price),
              Low=min(Price),
              Close=tail(Price,1),
              Volume=sum(Volume),
              # HighIdx=which.max(Price),
              # LowIdx=which.min(Price),
              TT=sum(TT,na.rm=T),
              VWAP=TT/Volume) %>%
    select(-volBinIdxk) %>%
    as.data.frame()
  
  return(data.return)
  
}


MakeBinCandlesXts<-function(data){
  ### PURPOSE: Turn bin candles from data.frame into xts object
  ### INPUT: data frame outputed by MakeBinCandles()
  ### OUTPUT: xts object
  library(xts)
  data$Date<-strptime(paste(data$Date,data$Time),"%m/%d/%Y %H:%M:%S")
  
  data<-data[,-2] # if I don't remove it, all columns become characters
  data.xts<-xts(data[,-1],order.by=as.POSIXct(data[,1]))
  
  return (data.xts)
  
}

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XYZ-EE-Long.txt
features-EE.txt
FT-functions-EE.txt
0
Comment
Question by:pgmerLA
  • 2
5 Comments
 

Author Comment

by:pgmerLA
ID: 40492832
I think I fixed the issue by adding:

dplyr::select(-volBinIdxk) inside the second function

Should I worry about something else? I don't want the program to crash unexpectedly

Here is the complete code:
MakeBinCandles<-function(data,volBinIdxk){

    library(dplyr)
   data.return<-data %>%
    mutate(volBinIdxk=volBinIdxk) %>%
    group_by(volBinIdxk) %>%
    summarize(Date=head(Date,1),
              Time=head(Time,1),
              Open=head(Price,1),
              High=max(Price),
              Low=min(Price),
              Close=tail(Price,1),
              Volume=sum(Volume),
              HighIdx=which.max(Price),
              LowIdx=which.min(Price),
              TT=sum(TT,na.rm=T),
              VWAP=TT/Volume) %>%
    dplyr::select(-volBinIdxk) %>%  #### I was getting the error here
    as.data.frame()
  
  return(data.return)
  
}

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0
 
LVL 49

Expert Comment

by:Vitor Montalvão
ID: 40495961
I'm just a R programming curious but wondering how many R experts we have here in EE. It would be enough experts and questions to create a new topic just for R programming language?
0
 
LVL 62

Accepted Solution

by:
gheist earned 500 total points
ID: 40495975
sessionInfo() please
and is it in rstudio or plain R? or can you repeat problem with R alone?

If you resolved yourself just close it.

I vote for idea of having R topic near Matlabs and SPSS-es etc too.
0
 
LVL 62

Expert Comment

by:gheist
ID: 40502420
Asker answered his question on first comment.
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