In phpStorm, how can I ignore line separator differences when syncing deployed files on a linux server with files on my windows PC?

I use phpStorm to develop on Magento sites. When I have downloaded code from Linux to my Windows 8 pc and then later try to sync the 2 to find and update changes made to the remote code, every file comes up as changed but the listed changes say 'Contents have differences in only line separators'. Here is a screenshot: http://screencast.com/t/6jf562rYsX

Can I get phpStorm to ignore these differences when syncing? Or can I get phpStorm to leave the line separators alone when downloading?

I've searched their help and found similar suggestions but nothing seemed to be exactly what I am experiencing (at least that I can tell). I am new to phpStorm and not very Linux savy.

Thanks for any guidance you can give!

lthamesAsked: 2015-06-10

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Terry WoodsIT GuruCommented: 2015-06-11

Have you seen this? https://www.jetbrains.com/phpstorm/help/configuring-line-separators.html

I think this bit might be relevant?

To change line separator for a file or directory, selected in the project view

Select a file or directory in the Project tool window.

Note that if a directory is selected, the line ending style applies to all nested files recursively.
Choose File | Line Separatorson the main menu, and then select the desired line ending style from the sub-menu.

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