Server 2012 Sub folders hidden and greyed out

Hi there, we think we had a virus on the server drives but it now scans clean. We have noticed that a lot of sub folders are showing as hidden but are greyed out to un hide. I have run unhide.vbs and unhide from Bleeping Computer but still no luck. Any ideas?
grovenetsupportAsked:
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Scott CSenior EngineerCommented:
Try this command:

J:\>attrib -H -S \*.* /S /D assuming J is your drive.

Be sure the command prompt is run with Admin privileges.
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Windows Server 2012

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