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Windows Server 2003 was based on Windows XP and was released in four editions: Web, Standard, Enterprise and Datacenter. It also had derivative versions for clusters, storage and Microsoft’s Small Business Server. Important upgrades included integrating Internet Information Services (IIS), improvements to Active Directory (AD) and Group Policy (GP), and the migration to Automated System Recovery (ASR).
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It sounds like you've rebuilt a corrupt partition and all the chkdsk /r is doing is slowing shaving away data the RAID is relying on and probably vice versa.
If you don't have a good backup, you need to stop everything and copy off all the data and put onto a trusted safe volume.