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Trying to repair Windows Server 2003 - No recovery option - Should I proceed with Install CD?

HP Proliant server  with RAID 5, Server 2003, 4 GB RAM - I think it's 8 years old or so.  Not sure.
Server Froze, after restart couldn't get Windows to Boot - there was an error message that files were missing, and I should boot from CD with -r option.  
Server had 2 partitions - an OS partition, and a Data Partition, which held all the files that are needed.

I booted from Server 2003 Standard Edition - couldn't tell what version of server was running.  It was only being used for file serving, and FileMaker Pro server - that's it.  
Instead of offering any options, Server 2003 install started - files were copied.  I let it run, and got a blue screen the third 'dot' through.  After a restart, install started running again.  Then I had some concern, so I refused to accept the agreement, and install stopped.

Is there a possibility that the registry entries for the previous server will be preserved?  I am having trouble locating the FileMaker Pro installation CD - user may have lost it.

I tried starting from a PartedMagic Linux repair memory stick, but the machine kept bypassing it.  I will test the memory stick on another Windows machine to make sure that it's properly imaged.

Can I let the installation finish?  It's possible that the Windows Server 2003 was badly corrupted, and I don't think there's much of a choice if the memory stick doesn't help.

Thanks
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Server must be more than 10 years old.  It Definitely had Win2003
The Install CD seemed to locate the RAID - it started copying files to it and began the install.

Below is the error message that appears on the screen when I try and boot from the last configuration that worked (it is second on the list - the first must be the partial new install)
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There were two partitions - system and data.   I booted from a Parted Magic memory stick, and I can see all the files.  I was able to copy files from the data drive to another memory stick.

Can I restore the Windows Server 2003 and keep the old settings?
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When I try and boot from either of the two 2003 Install CD's I have, the Server installation just starts - there is no option for a recovery console.
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I managed to get to the Recovery Console.  The only problem is:
  • I originally booted from the server install, didn't see the option for recovery console, and the install started.
  • I stopped this install
  • I switched from the blue Dell restore CD to the Microsoft Install CD and booted from that CD
  • Again, I didn't see the option for recovery console, let the install start, and stopped the install
  • Now it appears that I have two versions, however damaged or partial, of the Server OS
  • I believe that the second on the list is the original that I wish to repair
  • I selected that one

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Here is the error message that I got
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I selected C:\Windows, and have the prompt.
What should I do next?

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Drive C: appears to be the active one.  
In the config folder, I see the following files and dates
system 3.9MB 4/9/17  (after crash - around time I booted from CD and hoped to run a repair, but installer started)
software  24MB  4/9/17 (after crash - around time I booted from CD and hoped to run a repair, but installer started)
security  252K  4/9/17 (after crash - around time I booted from CD and hoped to run a repair, but installer started)
default  262K  4/5/17 (around time of crash)
sam   262K  4/9/17  (after crash - around time I booted from CD and hoped to run a repair, but installer started)  

There are lots of files with previous dates in the various folders inside of system32.
Need4answers:   I ran bootcfg, and added the first partition.  What should I do now?

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You should reboot and report what happens.
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What he said. Should be good :)
I restarted.  Results are below.

The computer went right to the Server 2003 Install  -  could this be a repair install of some sort?
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I have paused at the License Agreement.  The Server install CD is still in the machine.
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It got to this point with NO interaction on your part?  No clicks or anything?
No clicks on my part.  

The server install restarts.  Is it possible that this install is a repair install?  
If I continue, if there is a previous registry, will it be deleted, or combined into the new registry?
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I got very very lucky on this one.  I located a tech that had worked on it, and he told me that they had Acronis Enterprise installed, which made restorable images of the system drive.  

I could only use the Acronis on a Windows 2003 server, which I was lucky enough to have around - I think that my CD's were corrupted.
I had the installer for Acronis, and I was able to restore to a SATA drive, which booted into an April 2 image of the System.

Thanks to all for the help.  I wish that I had more points to assign.