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Yes, the only difference is the compilation process. The executables comes from the same source code which is completly released on this site.
However, I strongly recommend to use Tftpd64 because of antivirus behaviour: Tftpd32 has a bad rating for historical reasons (due to its minimal footprint, tftpd32 was embedded in the mid-2000 by a real virus for transfer files), whereas it brother compiled in 64 bits has a excellent rating.
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