Our issue at the highest level is that our DNS alias shares are not working and some authentication from non-Windows systems are having issues since our domain controller reboots.
We have one 2008 R2 DC and five (5) 2016 domain controllers in play at the moment. The only reason we are keeping the 2008 DC is for an old authentication system which will be decommissioned next month. However, one of our 2012 DC's was having an issue with CPU utilization/hung so it was rebooted. A few days later, we rebooted the 2008 DC and the troubles began. One thing to note, we have no issues accessing the NAS via the alias from a Win7 PC and/or a Windows 2008 R2 server. MS has not been able to help us this thing figure out.
Has anyone experienced anything like this and have any ideas?
Maybe you mean CNAME records.
You'll debug this by probing your DNS servers with dig or nslookup.
DNS will have no effect on CPU utilization... and if DNS is... incorrect... no telling what's occurring, which might be the root cause of CPU spinning.